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### What problem does this PR solve? Let file in knowledgebases visible in file manager. #162 ### Type of change - [x] New Feature (non-breaking change which adds functionality)
317 lines
10 KiB
Python
317 lines
10 KiB
Python
#
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# Copyright 2024 The InfiniFlow Authors. All Rights Reserved.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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#
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import datetime
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import json
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import logging
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import os
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import hashlib
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import copy
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import re
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import sys
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import time
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import traceback
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from functools import partial
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from api.db.services.file2document_service import File2DocumentService
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from rag.utils.minio_conn import MINIO
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from api.db.db_models import close_connection
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from rag.settings import database_logger, SVR_QUEUE_NAME
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from rag.settings import cron_logger, DOC_MAXIMUM_SIZE
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from multiprocessing import Pool
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import numpy as np
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from elasticsearch_dsl import Q
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from multiprocessing.context import TimeoutError
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from api.db.services.task_service import TaskService
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from rag.utils.es_conn import ELASTICSEARCH
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from timeit import default_timer as timer
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from rag.utils import rmSpace, findMaxTm
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from rag.nlp import search
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from io import BytesIO
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import pandas as pd
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from rag.app import laws, paper, presentation, manual, qa, table, book, resume, picture, naive, one
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from api.db import LLMType, ParserType
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from api.db.services.document_service import DocumentService
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from api.db.services.llm_service import LLMBundle
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from api.utils.file_utils import get_project_base_directory
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from rag.utils.redis_conn import REDIS_CONN
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BATCH_SIZE = 64
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FACTORY = {
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"general": naive,
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ParserType.NAIVE.value: naive,
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ParserType.PAPER.value: paper,
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ParserType.BOOK.value: book,
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ParserType.PRESENTATION.value: presentation,
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ParserType.MANUAL.value: manual,
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ParserType.LAWS.value: laws,
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ParserType.QA.value: qa,
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ParserType.TABLE.value: table,
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ParserType.RESUME.value: resume,
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ParserType.PICTURE.value: picture,
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ParserType.ONE.value: one,
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}
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def set_progress(task_id, from_page=0, to_page=-1,
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prog=None, msg="Processing..."):
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if prog is not None and prog < 0:
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msg = "[ERROR]" + msg
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cancel = TaskService.do_cancel(task_id)
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if cancel:
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msg += " [Canceled]"
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prog = -1
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if to_page > 0:
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if msg:
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msg = f"Page({from_page+1}~{to_page+1}): " + msg
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d = {"progress_msg": msg}
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if prog is not None:
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d["progress"] = prog
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try:
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TaskService.update_progress(task_id, d)
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except Exception as e:
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cron_logger.error("set_progress:({}), {}".format(task_id, str(e)))
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close_connection()
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if cancel:
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sys.exit()
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def collect():
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try:
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payload = REDIS_CONN.queue_consumer(SVR_QUEUE_NAME, "rag_flow_svr_task_broker", "rag_flow_svr_task_consumer")
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if not payload:
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time.sleep(1)
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return pd.DataFrame()
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except Exception as e:
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cron_logger.error("Get task event from queue exception:" + str(e))
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return pd.DataFrame()
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msg = payload.get_message()
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payload.ack()
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if not msg: return pd.DataFrame()
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if TaskService.do_cancel(msg["id"]):
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cron_logger.info("Task {} has been canceled.".format(msg["id"]))
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return pd.DataFrame()
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tasks = TaskService.get_tasks(msg["id"])
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assert tasks, "{} empty task!".format(msg["id"])
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tasks = pd.DataFrame(tasks)
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return tasks
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def get_minio_binary(bucket, name):
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return MINIO.get(bucket, name)
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def build(row):
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if row["size"] > DOC_MAXIMUM_SIZE:
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set_progress(row["id"], prog=-1, msg="File size exceeds( <= %dMb )" %
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(int(DOC_MAXIMUM_SIZE / 1024 / 1024)))
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return []
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callback = partial(
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set_progress,
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row["id"],
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row["from_page"],
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row["to_page"])
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chunker = FACTORY[row["parser_id"].lower()]
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try:
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st = timer()
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bucket, name = File2DocumentService.get_minio_address(doc_id=row["doc_id"])
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binary = get_minio_binary(bucket, name)
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cron_logger.info(
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"From minio({}) {}/{}".format(timer()-st, row["location"], row["name"]))
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cks = chunker.chunk(row["name"], binary=binary, from_page=row["from_page"],
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to_page=row["to_page"], lang=row["language"], callback=callback,
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kb_id=row["kb_id"], parser_config=row["parser_config"], tenant_id=row["tenant_id"])
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cron_logger.info(
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"Chunkking({}) {}/{}".format(timer()-st, row["location"], row["name"]))
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except TimeoutError as e:
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callback(-1, f"Internal server error: Fetch file timeout. Could you try it again.")
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cron_logger.error(
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"Chunkking {}/{}: Fetch file timeout.".format(row["location"], row["name"]))
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return
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except Exception as e:
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if re.search("(No such file|not found)", str(e)):
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callback(-1, "Can not find file <%s>" % row["name"])
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else:
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callback(-1, f"Internal server error: %s" %
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str(e).replace("'", ""))
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traceback.print_exc()
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cron_logger.error(
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"Chunkking {}/{}: {}".format(row["location"], row["name"], str(e)))
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return
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docs = []
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doc = {
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"doc_id": row["doc_id"],
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"kb_id": [str(row["kb_id"])]
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}
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el = 0
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for ck in cks:
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d = copy.deepcopy(doc)
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d.update(ck)
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md5 = hashlib.md5()
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md5.update((ck["content_with_weight"] +
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str(d["doc_id"])).encode("utf-8"))
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d["_id"] = md5.hexdigest()
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d["create_time"] = str(datetime.datetime.now()).replace("T", " ")[:19]
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d["create_timestamp_flt"] = datetime.datetime.now().timestamp()
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if not d.get("image"):
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docs.append(d)
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continue
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output_buffer = BytesIO()
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if isinstance(d["image"], bytes):
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output_buffer = BytesIO(d["image"])
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else:
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d["image"].save(output_buffer, format='JPEG')
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st = timer()
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MINIO.put(row["kb_id"], d["_id"], output_buffer.getvalue())
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el += timer() - st
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d["img_id"] = "{}-{}".format(row["kb_id"], d["_id"])
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del d["image"]
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docs.append(d)
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cron_logger.info("MINIO PUT({}):{}".format(row["name"], el))
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return docs
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def init_kb(row):
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idxnm = search.index_name(row["tenant_id"])
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if ELASTICSEARCH.indexExist(idxnm):
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return
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return ELASTICSEARCH.createIdx(idxnm, json.load(
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open(os.path.join(get_project_base_directory(), "conf", "mapping.json"), "r")))
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def embedding(docs, mdl, parser_config={}, callback=None):
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batch_size = 32
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tts, cnts = [rmSpace(d["title_tks"]) for d in docs if d.get("title_tks")], [
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re.sub(r"</?(table|td|caption|tr|th)( [^<>]{0,12})?>", " ", d["content_with_weight"]) for d in docs]
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tk_count = 0
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if len(tts) == len(cnts):
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tts_ = np.array([])
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for i in range(0, len(tts), batch_size):
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vts, c = mdl.encode(tts[i: i + batch_size])
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if len(tts_) == 0:
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tts_ = vts
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else:
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tts_ = np.concatenate((tts_, vts), axis=0)
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tk_count += c
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callback(prog=0.6 + 0.1 * (i + 1) / len(tts), msg="")
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tts = tts_
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cnts_ = np.array([])
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for i in range(0, len(cnts), batch_size):
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vts, c = mdl.encode(cnts[i: i + batch_size])
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if len(cnts_) == 0:
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cnts_ = vts
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else:
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cnts_ = np.concatenate((cnts_, vts), axis=0)
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tk_count += c
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callback(prog=0.7 + 0.2 * (i + 1) / len(cnts), msg="")
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cnts = cnts_
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title_w = float(parser_config.get("filename_embd_weight", 0.1))
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vects = (title_w * tts + (1 - title_w) *
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cnts) if len(tts) == len(cnts) else cnts
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assert len(vects) == len(docs)
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for i, d in enumerate(docs):
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v = vects[i].tolist()
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d["q_%d_vec" % len(v)] = v
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return tk_count
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def main():
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rows = collect()
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if len(rows) == 0:
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return
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for _, r in rows.iterrows():
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callback = partial(set_progress, r["id"], r["from_page"], r["to_page"])
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try:
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embd_mdl = LLMBundle(r["tenant_id"], LLMType.EMBEDDING, llm_name=r["embd_id"], lang=r["language"])
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except Exception as e:
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callback(-1, msg=str(e))
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cron_logger.error(str(e))
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continue
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st = timer()
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cks = build(r)
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cron_logger.info("Build chunks({}): {}".format(r["name"], timer()-st))
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if cks is None:
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continue
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if not cks:
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callback(1., "No chunk! Done!")
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continue
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# TODO: exception handler
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## set_progress(r["did"], -1, "ERROR: ")
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callback(
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msg="Finished slicing files(%d). Start to embedding the content." %
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len(cks))
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st = timer()
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try:
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tk_count = embedding(cks, embd_mdl, r["parser_config"], callback)
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except Exception as e:
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callback(-1, "Embedding error:{}".format(str(e)))
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cron_logger.error(str(e))
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tk_count = 0
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cron_logger.info("Embedding elapsed({}): {}".format(r["name"], timer()-st))
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callback(msg="Finished embedding({})! Start to build index!".format(timer()-st))
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init_kb(r)
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chunk_count = len(set([c["_id"] for c in cks]))
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st = timer()
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es_r = ELASTICSEARCH.bulk(cks, search.index_name(r["tenant_id"]))
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cron_logger.info("Indexing elapsed({}): {}".format(r["name"], timer()-st))
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if es_r:
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callback(-1, "Index failure!")
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ELASTICSEARCH.deleteByQuery(
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Q("match", doc_id=r["doc_id"]), idxnm=search.index_name(r["tenant_id"]))
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cron_logger.error(str(es_r))
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else:
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if TaskService.do_cancel(r["id"]):
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ELASTICSEARCH.deleteByQuery(
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Q("match", doc_id=r["doc_id"]), idxnm=search.index_name(r["tenant_id"]))
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continue
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callback(1., "Done!")
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DocumentService.increment_chunk_num(
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r["doc_id"], r["kb_id"], tk_count, chunk_count, 0)
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cron_logger.info(
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"Chunk doc({}), token({}), chunks({}), elapsed:{}".format(
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r["id"], tk_count, len(cks), timer()-st))
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if __name__ == "__main__":
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peewee_logger = logging.getLogger('peewee')
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peewee_logger.propagate = False
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peewee_logger.addHandler(database_logger.handlers[0])
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peewee_logger.setLevel(database_logger.level)
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while True:
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main()
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