diff --git a/.github/workflows/printer-linter-pr-diagnose.yml b/.github/workflows/printer-linter-pr-diagnose.yml
index 57c3732d81..c9c5fb2f60 100644
--- a/.github/workflows/printer-linter-pr-diagnose.yml
+++ b/.github/workflows/printer-linter-pr-diagnose.yml
@@ -37,6 +37,10 @@ jobs:
       - name: Create results directory
         run: mkdir printer-linter-result
 
+      - name: Check Deleted Files(s)
+        if: env.GIT_DIFF
+        run: python printer-linter/src/terminal.py --deleted --report printer-linter-result/fixes.yml $(echo "$GIT_DIFF" | grep '^D')
+
       - name: Diagnose file(s)
         if: env.GIT_DIFF && !env.MATCHED_FILES
         run: python printer-linter/src/terminal.py --diagnose --report printer-linter-result/fixes.yml ${{ env.GIT_DIFF_FILTERED }}
@@ -56,5 +60,5 @@ jobs:
         uses: platisd/clang-tidy-pr-comments@bc0bb7da034a8317d54e7fe1e819159002f4cc40
         with:
           github_token: ${{ secrets.GITHUB_TOKEN }}
-          clang_tidy_fixes: result.yml
+          clang_tidy_fixes: printer-linter-pr-post.yml
           request_changes: true
diff --git a/.printer-linter b/.printer-linter
index 3a42a5c033..e73e4f8ab2 100644
--- a/.printer-linter
+++ b/.printer-linter
@@ -3,6 +3,7 @@ checks:
     diagnostic-mesh-file-size: true
     diagnostic-definition-redundant-override: true
     diagnostic-resources-macos-app-directory-name: true
+    diagnostic-resource-file-deleted: true
 fixes:
     diagnostic-definition-redundant-override: true
 format:
diff --git a/printer-linter/pyproject.toml b/printer-linter/pyproject.toml
index c346dc0496..cde196225c 100644
--- a/printer-linter/pyproject.toml
+++ b/printer-linter/pyproject.toml
@@ -1,7 +1,7 @@
 [project]
 name = "printerlinter"
 description = "Cura UltiMaker printer linting tool"
-version = "0.1.1"
+version = "0.1.2"
 authors = [
     { name = "UltiMaker", email = "cura@ultimaker.com" }
 ]
diff --git a/printer-linter/src/printerlinter/factory.py b/printer-linter/src/printerlinter/factory.py
index 4473fb9a4e..0d706788fc 100644
--- a/printer-linter/src/printerlinter/factory.py
+++ b/printer-linter/src/printerlinter/factory.py
@@ -11,7 +11,7 @@ from .linters.directory import Directory
 def getLinter(file: Path, settings: dict) -> Optional[List[Linter]]:
     """ Returns a Linter depending on the file format """
     if not file.exists():
-        return None
+        return [Directory(file, settings)]
 
     if ".inst" in file.suffixes and ".cfg" in file.suffixes:
         return [Directory(file, settings), Profile(file, settings)]
diff --git a/printer-linter/src/printerlinter/linters/directory.py b/printer-linter/src/printerlinter/linters/directory.py
index 4ca299dad7..616c20af02 100644
--- a/printer-linter/src/printerlinter/linters/directory.py
+++ b/printer-linter/src/printerlinter/linters/directory.py
@@ -11,9 +11,12 @@ class Directory(Linter):
         super().__init__(file, settings)
 
     def check(self) -> Iterator[Diagnostic]:
-        if self._settings["checks"].get("diagnostic-resources-macos-app-directory-name", False):
+        if self._file.exists() and self._settings["checks"].get("diagnostic-resources-macos-app-directory-name", False):
             for check in self.checkForDotInDirName():
                 yield check
+        if self._settings["checks"].get("diagnostic-resource-file-deleted", False):
+            for check in self.checkFilesDeleted():
+                yield check
 
         yield
 
@@ -29,3 +32,14 @@ class Directory(Linter):
             )
         yield
 
+    def checkFilesDeleted(self) -> Iterator[Diagnostic]:
+        """ Check if there is a file that is deleted, this causes upgrade scripts to not work properly """
+
+        yield Diagnostic(
+            file = self._file,
+            diagnostic_name = "diagnostic-resource-file-deleted",
+            message = f"File: {self._file} must not be deleted as it is not allowed. It will create issues upgrading Cura",
+            level = "Error",
+            offset = 1
+        )
+        yield
\ No newline at end of file
diff --git a/printer-linter/src/terminal.py b/printer-linter/src/terminal.py
index fb5ee36bd0..fa2212285c 100644
--- a/printer-linter/src/terminal.py
+++ b/printer-linter/src/terminal.py
@@ -19,6 +19,7 @@ def main() -> None:
     parser.add_argument("--report", required=False, type=Path, help="Path where the diagnostic report should be stored")
     parser.add_argument("--format", action="store_true", help="Format the files")
     parser.add_argument("--diagnose", action="store_true", help="Diagnose the files")
+    parser.add_argument("--deleted", action="store_true", help="Check for deleted files")
     parser.add_argument("--fix", action="store_true", help="Attempt to apply the suggested fixes on the files")
     parser.add_argument("Files", metavar="F", type=Path, nargs="+", help="Files or directories to format")
 
@@ -47,6 +48,18 @@ def main() -> None:
             print(f"Can't find the file: {file}")
             return
 
+    if args.deleted and files ==[]:
+        for file in args.Files:
+            deletedFiles = diagnoseIssuesWithFile(file, settings )
+            full_body_check["Diagnostics"].extend([d.toDict() for d in deletedFiles])
+
+            results = yaml.dump(full_body_check, default_flow_style=False, indent=4, width=240)
+
+            if report:
+                report.write_text(results)
+            else:
+                print(results)
+
     if to_fix or to_diagnose:
         for file in files:
             diagnostics = diagnoseIssuesWithFile(file, settings)
@@ -82,7 +95,6 @@ def diagnoseIssuesWithFile(file: Path, settings: dict) -> List[Diagnostic]:
 
     return linter_results
 
-
 def applyFixesToFile(file, settings, full_body_check) -> None:
     if not file.exists():
         return