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fix bugs, update tetgen libigl files
This commit is contained in:
PavelMikus
parent
843a441d73
commit
33ec896b10
@ -13,6 +13,94 @@
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// STL includes
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#include <cassert>
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IGL_INLINE bool igl::copyleft::tetgen::mesh_to_tetgenio(
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const std::vector<std::vector<REAL > > & V,
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const std::vector<std::vector<int> > & F,
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const std::vector<std::vector<REAL> > & H,
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const std::vector<std::vector<REAL> > & R,
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tetgenio & in)
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{
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using namespace std;
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in.firstnumber = 0;
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in.numberofpoints = V.size();
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in.pointlist = new REAL[in.numberofpoints * 3];
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//loop over points
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for(size_t i = 0; i < (size_t)V.size(); i++)
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{
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assert(V[i].size() == 3);
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in.pointlist[i*3+0] = V[i][0];
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in.pointlist[i*3+1] = V[i][1];
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in.pointlist[i*3+2] = V[i][2];
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}
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in.numberoffacets = F.size();
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in.facetlist = new tetgenio::facet[in.numberoffacets];
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in.facetmarkerlist = new int[in.numberoffacets];
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// loop over face
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for(size_t i = 0;i < (size_t)F.size(); i++)
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{
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in.facetmarkerlist[i] = i;
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tetgenio::facet * f = &in.facetlist[i];
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f->numberofpolygons = 1;
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f->polygonlist = new tetgenio::polygon[f->numberofpolygons];
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f->numberofholes = 0;
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f->holelist = NULL;
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tetgenio::polygon * p = &f->polygonlist[0];
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p->numberofvertices = F[i].size();
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p->vertexlist = new int[p->numberofvertices];
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// loop around face
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for(int j = 0;j < (int)F[i].size(); j++)
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{
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p->vertexlist[j] = F[i][j];
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}
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}
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in.numberofholes = H.size();
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in.holelist = new double[3 * in.numberofholes];
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// loop over holes
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for(size_t holeID = 0, nHoles = H.size(); holeID < nHoles; holeID++)
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{
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in.holelist[holeID * 3 + 0] = H[holeID][0];
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in.holelist[holeID * 3 + 1] = H[holeID][1];
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in.holelist[holeID * 3 + 2] = H[holeID][2];
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}
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in.numberofregions = R.size();
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in.regionlist = new REAL[ 5 * in.numberofregions];
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// loop over regions
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for(size_t regionID = 0, nRegions = R.size(); regionID < nRegions; regionID++)
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{
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in.regionlist[regionID * 5 + 0] = R[regionID][0];
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in.regionlist[regionID * 5 + 1] = R[regionID][1];
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in.regionlist[regionID * 5 + 2] = R[regionID][2];
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in.regionlist[regionID * 5 + 3] = R[regionID][3];
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in.regionlist[regionID * 5 + 4] = R[regionID][4];
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}
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return true;
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}
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template <typename DerivedV, typename DerivedF, typename DerivedH, typename DerivedR>
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IGL_INLINE bool igl::copyleft::tetgen::mesh_to_tetgenio(
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const Eigen::PlainObjectBase<DerivedV>& V,
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const Eigen::PlainObjectBase<DerivedF>& F,
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const Eigen::PlainObjectBase<DerivedH>& H,
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const Eigen::PlainObjectBase<DerivedR>& R,
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tetgenio & in)
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{
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using namespace std;
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vector<vector<REAL> > vV, vH, vR;
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vector<vector<int> > vF;
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matrix_to_list(V,vV);
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matrix_to_list(F,vF);
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matrix_to_list(H, vH);
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matrix_to_list(R, vR);
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return mesh_to_tetgenio(vV,vF,vH,vR,in);
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}
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IGL_INLINE bool igl::copyleft::tetgen::mesh_to_tetgenio(
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const std::vector<std::vector<REAL > > & V,
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const std::vector<std::vector<int> > & F,
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@ -43,6 +43,38 @@ namespace igl
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const Eigen::PlainObjectBase<DerivedV>& V,
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const Eigen::PlainObjectBase<DerivedF>& F,
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tetgenio & in);
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// Load a vertex list and face list into a tetgenio object
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// Inputs:
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// V #V by 3 vertex position list
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// F #F list of polygon face indices into V (0-indexed)
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// H #H list of seed point inside each hole
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// R #R list of seed point inside each region
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// Outputs:
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// in tetgenio input object
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// Returns true on success, false on error
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IGL_INLINE bool mesh_to_tetgenio(
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const std::vector<std::vector<REAL> > & V,
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const std::vector<std::vector<int> > & F,
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const std::vector<std::vector<REAL > > & H,
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const std::vector<std::vector<REAL > > & R,
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tetgenio & in);
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// Wrapper with Eigen types
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// Templates:
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// DerivedV real-value: i.e. from MatrixXd
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// DerivedF integer-value: i.e. from MatrixXi
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// DerivedH real-value
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// DerivedR real-value
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template <typename DerivedV, typename DerivedF, typename DerivedH, typename DerivedR>
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IGL_INLINE bool mesh_to_tetgenio(
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const Eigen::PlainObjectBase<DerivedV>& V,
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const Eigen::PlainObjectBase<DerivedF>& F,
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const Eigen::PlainObjectBase<DerivedH>& H,
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const Eigen::PlainObjectBase<DerivedR>& R,
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tetgenio& in);
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}
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}
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}
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@ -63,14 +63,12 @@ IGL_INLINE bool igl::copyleft::tetgen::tetgenio_to_tetmesh(
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assert(max_index >= 0);
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assert(max_index < (int)V.size());
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cout<<out.numberoftrifaces<<endl;
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// When would this not be 4?
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F.clear();
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// loop over tetrahedra
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for(int i = 0; i < out.numberoftrifaces; i++)
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{
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if(out.trifacemarkerlist[i]>=0)
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if (out.trifacemarkerlist && out.trifacemarkerlist[i] >= 0)
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{
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vector<int> face(3);
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for(int j = 0; j<3; j++)
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@ -84,12 +82,13 @@ IGL_INLINE bool igl::copyleft::tetgen::tetgenio_to_tetmesh(
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return true;
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}
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template <typename DerivedV, typename DerivedT>
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IGL_INLINE bool igl::copyleft::tetgen::tetgenio_to_tetmesh(
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const tetgenio & out,
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std::vector<std::vector<REAL > > & V,
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std::vector<std::vector<int> > & T)
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Eigen::PlainObjectBase<DerivedV>& V,
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Eigen::PlainObjectBase<DerivedT>& T)
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{
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std::vector<std::vector<int> > F;
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Eigen::Matrix<typename DerivedT::Scalar,Eigen::Dynamic,3> F;
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return tetgenio_to_tetmesh(out,V,T,F);
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}
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@ -130,16 +129,151 @@ IGL_INLINE bool igl::copyleft::tetgen::tetgenio_to_tetmesh(
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return true;
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}
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template <typename DerivedV, typename DerivedT>
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IGL_INLINE bool igl::copyleft::tetgen::tetgenio_to_tetmesh(
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const tetgenio & out,
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Eigen::PlainObjectBase<DerivedV>& V,
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Eigen::PlainObjectBase<DerivedT>& T)
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std::vector<std::vector<REAL > > & V,
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std::vector<std::vector<int> > & T)
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{
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Eigen::Matrix<typename DerivedT::Scalar,Eigen::Dynamic,3> F;
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std::vector<std::vector<int> > F;
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return tetgenio_to_tetmesh(out,V,T,F);
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}
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IGL_INLINE bool igl::copyleft::tetgen::tetgenio_to_tetmesh(
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const tetgenio & out,
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std::vector<std::vector<REAL > > & V,
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std::vector<std::vector<int> > & T,
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std::vector<std::vector<int > > & F,
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std::vector<std::vector<REAL > >& R,
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std::vector<std::vector<int > >& N,
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std::vector<std::vector<int > >& PT,
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std::vector<std::vector<int > >& FT,
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size_t & nR )
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{
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using namespace std;
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// process points
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if(out.pointlist == NULL)
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{
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cerr<<"^tetgenio_to_tetmesh Error: point list is NULL\n"<<endl;
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return false;
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}
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V.resize(out.numberofpoints,vector<REAL>(3));
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// loop over points
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for(int i = 0;i < out.numberofpoints; i++)
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{
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V[i][0] = out.pointlist[i*3+0];
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V[i][1] = out.pointlist[i*3+1];
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V[i][2] = out.pointlist[i*3+2];
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}
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// process tets
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if(out.tetrahedronlist == NULL)
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{
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cerr<<"^tetgenio_to_tetmesh Error: tet list is NULL\n"<<endl;
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return false;
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}
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// When would this not be 4?
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assert(out.numberofcorners == 4);
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T.resize(out.numberoftetrahedra,vector<int>(out.numberofcorners));
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int min_index = 1e7;
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int max_index = -1e7;
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// loop over tetrahedra
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for(int i = 0; i < out.numberoftetrahedra; i++)
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{
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for(int j = 0; j<out.numberofcorners; j++)
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{
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int index = out.tetrahedronlist[i * out.numberofcorners + j];
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T[i][j] = index;
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min_index = (min_index > index ? index : min_index);
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max_index = (max_index < index ? index : max_index);
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}
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}
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assert(min_index >= 0);
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assert(max_index >= 0);
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assert(max_index < (int)V.size());
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// When would this not be 4?
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F.clear();
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// loop over tetrahedra
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for(int i = 0; i < out.numberoftrifaces; i++)
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{
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if(out.trifacemarkerlist[i]>=0)
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{
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vector<int> face(3);
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for(int j = 0; j<3; j++)
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{
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face[j] = out.trifacelist[i * 3 + j];
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}
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F.push_back(face);
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}
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}
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if(out.tetrahedronattributelist)
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{
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R.resize(out.numberoftetrahedra, vector<REAL>(1));
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unordered_map<REAL, REAL> hashUniqueRegions;
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for(size_t i = 0; i < out.numberoftetrahedra; i++)
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{
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R[i][0] = out.tetrahedronattributelist[i];
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hashUniqueRegions[R[i][0]] = i;
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}
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// extract region marks
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nR = hashUniqueRegions.size();
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}else
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{
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R.clear();
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nR = 0;
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}
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// extract neighbor list
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if(out.neighborlist)
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{
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N.resize(out.numberoftetrahedra, vector<int>(4));
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for (size_t i = 0; i < out.numberoftetrahedra; i++)
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{
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for (size_t j = 0; j < 4; j++)
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N[i][j] = out.neighborlist[i * 4 + j];
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}
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}else
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{
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N.clear();
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}
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// extract point 2 tetrahedron list
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if(out.point2tetlist)
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{
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PT.resize(out.numberofpoints, vector<int>(1));
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for (size_t i = 0; i < out.numberofpoints; i++)
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{
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PT[i][0] = out.point2tetlist[i];
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}
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}else
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{
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PT.clear();
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}
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//extract face to tetrahedron list
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if(out.face2tetlist)
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{
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FT.resize(out.numberoftrifaces, vector<int>(2));
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int triface;
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for (size_t i = 0; i < out.numberoftrifaces; i++)
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{
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for (size_t j = 0; j < 2; j++)
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{
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FT[i][j] = out.face2tetlist[0];
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}
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}
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}else
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{
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FT.clear();
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}
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return true;
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}
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#ifdef IGL_STATIC_LIBRARY
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// Explicit template instantiation
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template bool igl::copyleft::tetgen::tetgenio_to_tetmesh<Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1> >(tetgenio const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&);
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@ -14,6 +14,7 @@
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#endif
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#include "tetgen.h" // Defined tetgenio, REAL
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#include <vector>
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#include <unordered_map>
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#include <Eigen/Core>
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namespace igl
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{
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@ -34,6 +35,7 @@ namespace igl
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std::vector<std::vector<REAL > > & V,
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std::vector<std::vector<int> > & T,
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std::vector<std::vector<int> > & F);
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IGL_INLINE bool tetgenio_to_tetmesh(
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const tetgenio & out,
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std::vector<std::vector<REAL > > & V,
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@ -49,12 +51,38 @@ namespace igl
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Eigen::PlainObjectBase<DerivedV>& V,
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Eigen::PlainObjectBase<DerivedT>& T,
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Eigen::PlainObjectBase<DerivedF>& F);
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template <typename DerivedV, typename DerivedT>
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IGL_INLINE bool tetgenio_to_tetmesh(
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const tetgenio & out,
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Eigen::PlainObjectBase<DerivedV>& V,
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Eigen::PlainObjectBase<DerivedT>& T);
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}
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// Extract a tetrahedral mesh from a tetgenio object
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// Inputs:
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// out tetgenio output object
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// Outputs:
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// V #V by 3 vertex position list
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// T #T by 4 list of tetrahedra indices into V
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// F #F by 3 list of marked facets
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// R #T list of region IDs for tetrahedra
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// N #T by 2 list of neighbors for each tetrahedron
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// PT #V list of incident tetrahedron for each vertex
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// FT #F by 2 list of tetrahedra sharing each face
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// nR number of regions in output mesh
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// Returns true on success, false on error
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IGL_INLINE bool tetgenio_to_tetmesh(
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const tetgenio & out,
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std::vector<std::vector<REAL > > & V,
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std::vector<std::vector<int> > & T,
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std::vector<std::vector<int> > & F,
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std::vector<std::vector<REAL> > & R,// region marks for tetrahedrons
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std::vector<std::vector<int > > &N, // neighborlist per tet
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std::vector<std::vector<int > > &PT, // Point to tet list per point
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std::vector<std::vector<int > > &FT, // face to tet list
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size_t & nR); // number of regions
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}
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}
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}
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@ -55,7 +55,7 @@ IGL_INLINE int igl::copyleft::tetgen::tetrahedralize(
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{
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return -1;
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}
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//boundary_facets(TT,TF);
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boundary_facets(TT,TF);
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return 0;
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}
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@ -66,8 +66,8 @@ template <
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typename DerivedTT,
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typename DerivedTF>
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IGL_INLINE int igl::copyleft::tetgen::tetrahedralize(
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const Eigen::PlainObjectBase<DerivedV>& V,
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const Eigen::PlainObjectBase<DerivedF>& F,
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const Eigen::MatrixBase<DerivedV>& V,
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const Eigen::MatrixBase<DerivedF>& F,
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const std::string switches,
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Eigen::PlainObjectBase<DerivedTV>& TV,
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Eigen::PlainObjectBase<DerivedTT>& TT,
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@ -110,10 +110,10 @@ template <
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typename DerivedTF,
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typename DerivedTM>
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IGL_INLINE int igl::copyleft::tetgen::tetrahedralize(
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const Eigen::PlainObjectBase<DerivedV>& V,
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const Eigen::PlainObjectBase<DerivedF>& F,
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const Eigen::PlainObjectBase<DerivedVM>& VM,
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const Eigen::PlainObjectBase<DerivedFM>& FM,
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const Eigen::MatrixBase<DerivedV>& V,
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const Eigen::MatrixBase<DerivedF>& F,
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const Eigen::MatrixBase<DerivedVM>& VM,
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const Eigen::MatrixBase<DerivedFM>& FM,
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const std::string switches,
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Eigen::PlainObjectBase<DerivedTV>& TV,
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Eigen::PlainObjectBase<DerivedTT>& TT,
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@ -127,8 +127,8 @@ IGL_INLINE int igl::copyleft::tetgen::tetrahedralize(
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matrix_to_list(V,vV);
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matrix_to_list(F,vF);
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vector<int> vVM = matrix_to_list(VM);
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vector<int> vFM = matrix_to_list(FM);
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vector<int> vVM = matrix_to_list(VM);
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vector<int> vFM = matrix_to_list(FM);
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int e = tetrahedralize(vV,vF,vVM,vFM,switches,vTV,vTT,vTF,vTM);
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if(e == 0)
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{
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@ -155,6 +155,7 @@ IGL_INLINE int igl::copyleft::tetgen::tetrahedralize(
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}
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return e;
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}
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IGL_INLINE int igl::copyleft::tetgen::tetrahedralize(
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const std::vector<std::vector<REAL > > & V,
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const std::vector<std::vector<int> > & F,
|
||||
@ -208,13 +209,138 @@ IGL_INLINE int igl::copyleft::tetgen::tetrahedralize(
|
||||
for (int i = 0; i < out.numberofpoints; ++i) {
|
||||
TM[i] = out.pointmarkerlist[i];
|
||||
}
|
||||
//boundary_facets(TT,TF);
|
||||
boundary_facets(TT,TF);
|
||||
return 0;
|
||||
}
|
||||
|
||||
IGL_INLINE int igl::copyleft::tetgen::tetrahedralize(
|
||||
const std::vector<std::vector<REAL > > & V,
|
||||
const std::vector<std::vector<int> > & F,
|
||||
const std::vector<std::vector<REAL > > & H,
|
||||
const std::vector<std::vector<REAL > > & R,
|
||||
const std::string switches,
|
||||
std::vector<std::vector<REAL > > & TV,
|
||||
std::vector<std::vector<int > > & TT,
|
||||
std::vector<std::vector<int > > & TF,
|
||||
std::vector<std::vector<REAL > > &TR,
|
||||
std::vector<std::vector<int > > & TN,
|
||||
std::vector<std::vector<int > > & PT,
|
||||
std::vector<std::vector<int > > & FT,
|
||||
size_t & numRegions)
|
||||
{
|
||||
using namespace std;
|
||||
tetgenio in,out;
|
||||
bool success;
|
||||
success = mesh_to_tetgenio(V, F, H, R, in);
|
||||
if(!success)
|
||||
{
|
||||
return -1;
|
||||
}
|
||||
try
|
||||
{
|
||||
char * cswitches = new char[switches.size() + 1];
|
||||
strcpy(cswitches, switches.c_str());
|
||||
|
||||
::tetrahedralize(cswitches, &in, &out);
|
||||
delete[] cswitches;
|
||||
}catch(int e)
|
||||
{
|
||||
cerr <<"^"<<__FUNCTION__<<": TETGEN CRASHED...KABOOM!!"<<endl;
|
||||
return 1;
|
||||
}
|
||||
if(out.numberoftetrahedra == 0)
|
||||
{
|
||||
cerr<<"^"<<__FUNCTION__<<": Tetgen failed to create tets"<<endl;
|
||||
return 2;
|
||||
}
|
||||
success = tetgenio_to_tetmesh(out, TV, TT, TF, TR, TN, PT, FT, numRegions
|
||||
);
|
||||
if(!success)
|
||||
{
|
||||
return -1;
|
||||
}
|
||||
return 0;
|
||||
}
|
||||
|
||||
template <
|
||||
typename DerivedV,
|
||||
typename DerivedF,
|
||||
typename DerivedH,
|
||||
typename DerivedR,
|
||||
typename DerivedTV,
|
||||
typename DerivedTT,
|
||||
typename DerivedTF,
|
||||
typename DerivedTR>
|
||||
IGL_INLINE int igl::copyleft::tetgen::tetrahedralize(
|
||||
const Eigen::MatrixBase<DerivedV>& V,
|
||||
const Eigen::MatrixBase<DerivedF>& F,
|
||||
const Eigen::MatrixBase<DerivedH>& H,
|
||||
const Eigen::MatrixBase<DerivedR>& R,
|
||||
const std::string switches,
|
||||
Eigen::PlainObjectBase<DerivedTV>& TV,
|
||||
Eigen::PlainObjectBase<DerivedTT>& TT,
|
||||
Eigen::PlainObjectBase<DerivedTF>& TF,
|
||||
Eigen::PlainObjectBase<DerivedTR>& TR,
|
||||
Eigen::PlainObjectBase<DerivedTT>& TN,
|
||||
Eigen::PlainObjectBase<DerivedTT>& PT,
|
||||
Eigen::PlainObjectBase<DerivedTT>& FT,
|
||||
size_t & numRegions)
|
||||
{
|
||||
using namespace std;
|
||||
vector<vector<REAL> > vV, vH, vR, vTV, vTR;
|
||||
vector<vector<int> > vF,vTT,vTF, vTN, vPT, vFT;
|
||||
matrix_to_list(V,vV);
|
||||
matrix_to_list(F,vF);
|
||||
matrix_to_list(H, vH);
|
||||
matrix_to_list(R, vR);
|
||||
|
||||
int e = tetrahedralize(vV,vF,vH,vR,switches,vTV,vTT,vTF,vTR,vTN,vPT,vFT, numRegions);
|
||||
|
||||
if(e == 0)
|
||||
{
|
||||
bool TV_rect = list_to_matrix(vTV,TV);
|
||||
if(!TV_rect)
|
||||
{
|
||||
return 3;
|
||||
}
|
||||
bool TT_rect = list_to_matrix(vTT,TT);
|
||||
if(!TT_rect)
|
||||
{
|
||||
return 3;
|
||||
}
|
||||
bool TF_rect = list_to_matrix(vTF,TF);
|
||||
if(!TF_rect)
|
||||
{
|
||||
return 3;
|
||||
}
|
||||
bool TR_rect = list_to_matrix(vTR, TR);
|
||||
if(!TR_rect)
|
||||
{
|
||||
return 3;
|
||||
}
|
||||
bool TN_rect = list_to_matrix(vTN, TN);
|
||||
if(!TN_rect)
|
||||
{
|
||||
return 3;
|
||||
}
|
||||
bool PT_rect = list_to_matrix(vPT, PT);
|
||||
if(!PT_rect)
|
||||
{
|
||||
return 3;
|
||||
}
|
||||
bool FT_rect = list_to_matrix(vFT, FT);
|
||||
if(!FT_rect)
|
||||
{
|
||||
return 3;
|
||||
}
|
||||
}
|
||||
return e;
|
||||
}
|
||||
|
||||
#ifdef IGL_STATIC_LIBRARY
|
||||
// Explicit template instantiation
|
||||
template int igl::copyleft::tetgen::tetrahedralize<Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&);
|
||||
template int igl::copyleft::tetgen::tetrahedralize<Eigen::Matrix<double, -1, -1, 0, -1, -1>,Eigen::Matrix<int, -1, -1, 0, -1, -1>,Eigen::Matrix<int, -1, 1, 0, -1, 1>,Eigen::Matrix<int, -1, 1, 0, -1, 1>,Eigen::Matrix<double, -1, -1, 0, -1, -1>,Eigen::Matrix<int, -1, -1, 0, -1, -1>,Eigen::Matrix<int, -1, -1, 0, -1, -1>,Eigen::Matrix<int, -1, 1, 0, -1, 1> >(const Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > &,const Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > &,const Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1, 0, -1, 1> > &,const Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1, 0, -1, 1> > &,const std::basic_string<char, std::char_traits<char>, std::allocator<char> >,Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > &,Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > &,Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > &, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1, 0, -1, 1> > &);
|
||||
template int igl::copyleft::tetgen::tetrahedralize<Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&);
|
||||
template int igl::copyleft::tetgen::tetrahedralize<Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1> >(Eigen::MatrixBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::MatrixBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&);
|
||||
template int igl::copyleft::tetgen::tetrahedralize<Eigen::Matrix<double, -1, -1, 0, -1, -1>,Eigen::Matrix<int, -1, -1, 0, -1, -1>,Eigen::Matrix<int, -1, 1, 0, -1, 1>,Eigen::Matrix<int, -1, 1, 0, -1, 1>,Eigen::Matrix<double, -1, -1, 0, -1, -1>,Eigen::Matrix<int, -1, -1, 0, -1, -1>,Eigen::Matrix<int, -1, -1, 0, -1, -1>,Eigen::Matrix<int, -1, 1, 0, -1, 1> >(const Eigen::MatrixBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > &,const Eigen::MatrixBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > &,const Eigen::MatrixBase<Eigen::Matrix<int, -1, 1, 0, -1, 1> > &,const Eigen::MatrixBase<Eigen::Matrix<int, -1, 1, 0, -1, 1> > &,const std::basic_string<char, std::char_traits<char>, std::allocator<char> >,Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > &,Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > &,Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > &, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1, 0, -1, 1> > &);
|
||||
template int igl::copyleft::tetgen::tetrahedralize<Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1> >(Eigen::MatrixBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::MatrixBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, Eigen::MatrixBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, Eigen::MatrixBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&);
|
||||
template int igl::copyleft::tetgen::tetrahedralize<Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, -1, 0, -1, -1> >(Eigen::MatrixBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::MatrixBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, Eigen::MatrixBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::MatrixBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&, unsigned long&);
|
||||
#endif
|
||||
|
||||
@ -15,7 +15,7 @@
|
||||
#ifndef TETLIBRARY
|
||||
#define TETLIBRARY
|
||||
#endif
|
||||
#include "tetgen.h" // Defined REAL
|
||||
#include <tetgen.h> // Defined REAL
|
||||
|
||||
namespace igl
|
||||
{
|
||||
@ -61,19 +61,19 @@ namespace igl
|
||||
typename DerivedTT,
|
||||
typename DerivedTF>
|
||||
IGL_INLINE int tetrahedralize(
|
||||
const Eigen::PlainObjectBase<DerivedV>& V,
|
||||
const Eigen::PlainObjectBase<DerivedF>& F,
|
||||
const Eigen::MatrixBase<DerivedV>& V,
|
||||
const Eigen::MatrixBase<DerivedF>& F,
|
||||
const std::string switches,
|
||||
Eigen::PlainObjectBase<DerivedTV>& TV,
|
||||
Eigen::PlainObjectBase<DerivedTT>& TT,
|
||||
Eigen::PlainObjectBase<DerivedTF>& TF);
|
||||
|
||||
// Mesh the interior of a surface mesh (V,F) using tetgen
|
||||
// Mesh the interior of a surface mesh (V,F) using tetgen
|
||||
//
|
||||
// Inputs:
|
||||
// V #V by 3 vertex position list
|
||||
// F #F list of polygon face indices into V (0-indexed)
|
||||
// M #V list of markers for vertices
|
||||
// M #V list of markers for vertices
|
||||
// switches string of tetgen options (See tetgen documentation) e.g.
|
||||
// "pq1.414a0.01" tries to mesh the interior of a given surface with
|
||||
// quality and area constraints
|
||||
@ -82,7 +82,7 @@ namespace igl
|
||||
// TV #V by 3 vertex position list
|
||||
// TT #T by 4 list of tet face indices
|
||||
// TF #F by 3 list of triangle face indices
|
||||
// TM #V list of markers for vertices
|
||||
// TM #V list of markers for vertices
|
||||
// Returns status:
|
||||
// 0 success
|
||||
// 1 tetgen threw exception
|
||||
@ -92,14 +92,13 @@ namespace igl
|
||||
IGL_INLINE int tetrahedralize(
|
||||
const std::vector<std::vector<REAL > > & V,
|
||||
const std::vector<std::vector<int> > & F,
|
||||
const std::vector<int> & VM,
|
||||
const std::vector<int> & FM,
|
||||
const std::vector<int> & VM,
|
||||
const std::vector<int> & FM,
|
||||
const std::string switches,
|
||||
std::vector<std::vector<REAL > > & TV,
|
||||
std::vector<std::vector<int > > & TT,
|
||||
std::vector<std::vector<int> > & TF,
|
||||
std::vector<int> & TM);
|
||||
|
||||
std::vector<int> & TM);
|
||||
// Wrapper with Eigen types
|
||||
// Templates:
|
||||
// DerivedV real-value: i.e. from MatrixXd
|
||||
@ -107,23 +106,90 @@ namespace igl
|
||||
template <
|
||||
typename DerivedV,
|
||||
typename DerivedF,
|
||||
typename DerivedVM,
|
||||
typename DerivedFM,
|
||||
typename DerivedVM,
|
||||
typename DerivedFM,
|
||||
typename DerivedTV,
|
||||
typename DerivedTT,
|
||||
typename DerivedTF,
|
||||
typename DerivedTM>
|
||||
IGL_INLINE int tetrahedralize(
|
||||
const Eigen::PlainObjectBase<DerivedV>& V,
|
||||
const Eigen::PlainObjectBase<DerivedF>& F,
|
||||
const Eigen::PlainObjectBase<DerivedVM>& VM,
|
||||
const Eigen::PlainObjectBase<DerivedFM>& FM,
|
||||
const Eigen::MatrixBase<DerivedV>& V,
|
||||
const Eigen::MatrixBase<DerivedF>& F,
|
||||
const Eigen::MatrixBase<DerivedVM>& VM,
|
||||
const Eigen::MatrixBase<DerivedFM>& FM,
|
||||
const std::string switches,
|
||||
Eigen::PlainObjectBase<DerivedTV>& TV,
|
||||
Eigen::PlainObjectBase<DerivedTT>& TT,
|
||||
Eigen::PlainObjectBase<DerivedTF>& TF,
|
||||
Eigen::PlainObjectBase<DerivedTM>& TM);
|
||||
}
|
||||
// Mesh the interior of a surface mesh (V,F) using tetgen
|
||||
//
|
||||
// Inputs:
|
||||
// V #V by 3 vertex position list
|
||||
// F #F list of polygon face indices into V (0-indexed)
|
||||
// H #H by 3 list of seed points inside holes
|
||||
// R #R by 5 list of region attributes
|
||||
// switches string of tetgen options (See tetgen documentation) e.g.
|
||||
// "pq1.414a0.01" tries to mesh the interior of a given surface with
|
||||
// quality and area constraints
|
||||
// "" will mesh the convex hull constrained to pass through V (ignores F)
|
||||
// Outputs:
|
||||
// TV #TV by 3 vertex position list
|
||||
// TT #TT by 4 list of tet face indices
|
||||
// TF #TF by 3 list of triangle face indices
|
||||
// TR #TT list of region ID for each tetrahedron
|
||||
// TN #TT by 4 list of indices neighbors for each tetrahedron
|
||||
// PT #TV list of incident tetrahedron for a vertex
|
||||
// FT #TF by 2 list of tetrahedrons sharing a triface
|
||||
// numRegions Number of regions in output mesh
|
||||
// Returns status:
|
||||
// 0 success
|
||||
// 1 tetgen threw exception
|
||||
// 2 tetgen did not crash but could not create any tets (probably there are
|
||||
// holes, duplicate faces etc.)
|
||||
// -1 other error
|
||||
IGL_INLINE int tetrahedralize(
|
||||
const std::vector<std::vector<REAL> > &V,
|
||||
const std::vector<std::vector<int> > &F,
|
||||
const std::vector<std::vector<REAL> > &H,
|
||||
const std::vector<std::vector<REAL> > &R,
|
||||
const std::string switches,
|
||||
std::vector<std::vector<REAL > > & TV,
|
||||
std::vector<std::vector<int > > & TT,
|
||||
std::vector<std::vector<int > > & TF,
|
||||
std::vector<std::vector<REAL > > &TR,
|
||||
std::vector<std::vector<int > > &TN,
|
||||
std::vector<std::vector<int > > &PT,
|
||||
std::vector<std::vector<int > > &FT,
|
||||
size_t & numRegions);
|
||||
// Wrapper with Eigen types
|
||||
// Templates:
|
||||
// DerivedV real-value: i.e. from MatrixXd
|
||||
// DerivedF integer-value: i.e. from MatrixXi
|
||||
template <
|
||||
typename DerivedV,
|
||||
typename DerivedF,
|
||||
typename DerivedH,
|
||||
typename DerivedR,
|
||||
typename DerivedTV,
|
||||
typename DerivedTT,
|
||||
typename DerivedTF,
|
||||
typename DerivedTR>
|
||||
IGL_INLINE int tetrahedralize(
|
||||
const Eigen::MatrixBase<DerivedV>& V,
|
||||
const Eigen::MatrixBase<DerivedF>& F,
|
||||
const Eigen::MatrixBase<DerivedH>& H,
|
||||
const Eigen::MatrixBase<DerivedR>& R,
|
||||
const std::string switches,
|
||||
Eigen::PlainObjectBase<DerivedTV>& TV,
|
||||
Eigen::PlainObjectBase<DerivedTT>& TT,
|
||||
Eigen::PlainObjectBase<DerivedTF>& TF,
|
||||
Eigen::PlainObjectBase<DerivedTR>& TR,
|
||||
Eigen::PlainObjectBase<DerivedTT>& TN,
|
||||
Eigen::PlainObjectBase<DerivedTT>& PT,
|
||||
Eigen::PlainObjectBase<DerivedTT>& FT,
|
||||
size_t & numRegions);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@ -6,14 +6,15 @@
|
||||
|
||||
#include "libigl/igl/copyleft/marching_cubes.h"
|
||||
#include "libigl/igl/voxel_grid.h"
|
||||
#include "libigl/igl/for_each.h"
|
||||
#include "libigl/igl/barycenter.h"
|
||||
#include "libigl/igl/remove_unreferenced.h"
|
||||
#include "libigl/igl/copyleft/cgal/remesh_self_intersections.h"
|
||||
#include "libigl/igl/winding_number.h"
|
||||
#include "libigl/igl/boundary_facets.h"
|
||||
#include "libigl/igl/copyleft/cgal/convex_hull.h"
|
||||
#include "libigl/igl/copyleft/cgal/outer_hull.h"
|
||||
#include "libigl/igl/copyleft/tetgen/tetrahedralize.h"
|
||||
#include "libigl/igl/copyleft/tetgen/cdt.h"
|
||||
|
||||
#include <algorithm>
|
||||
#include <string.h>
|
||||
@ -37,7 +38,6 @@
|
||||
#include <wx/msgdlg.h>
|
||||
#include <wx/progdlg.h>
|
||||
|
||||
|
||||
namespace Slic3r {
|
||||
|
||||
class RepairCanceledException: public std::exception {
|
||||
@ -54,14 +54,13 @@ public:
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
namespace detail {
|
||||
|
||||
indexed_triangle_set fix_model_volume_mesh(const indexed_triangle_set &mesh) {
|
||||
//first compute convex hull
|
||||
Eigen::MatrixXd vertices;
|
||||
Eigen::MatrixXi faces;
|
||||
Eigen::MatrixXi hull_faces;
|
||||
// Eigen::MatrixXi hull_faces;
|
||||
{
|
||||
Eigen::MatrixXf orig_v(mesh.vertices.size(), 3);
|
||||
Eigen::MatrixXi orig_f(mesh.indices.size(), 3);
|
||||
@ -77,37 +76,50 @@ indexed_triangle_set fix_model_volume_mesh(const indexed_triangle_set &mesh) {
|
||||
std::cout << "orig vertices: " << orig_v.rows() << std::endl;
|
||||
std::cout << "orig faces: " << orig_f.rows() << std::endl;
|
||||
|
||||
Eigen::VectorXi I;
|
||||
Eigen::MatrixXi IF;
|
||||
Eigen::VectorXi J;
|
||||
Eigen::VectorXi IM;
|
||||
//resolve self intersections
|
||||
igl::copyleft::cgal::remesh_self_intersections(orig_v, orig_f, { }, vertices, faces, IF, J, I);
|
||||
igl::copyleft::cgal::remesh_self_intersections(orig_v, orig_f, { }, vertices, faces, IF, J, IM);
|
||||
std::cout << "remeshed vertices: " << vertices.rows() << std::endl;
|
||||
std::cout << "remeshed faces: " << faces.rows() << std::endl;
|
||||
|
||||
// compute hull
|
||||
igl::copyleft::cgal::convex_hull(vertices, hull_faces);
|
||||
// _apply_ duplicate vertex mapping IM to FF
|
||||
for (int i = 0; i < faces.size(); ++i) {
|
||||
faces.data()[i] = IM(faces.data()[i]);
|
||||
}
|
||||
|
||||
std::cout << " hull faces: " << hull_faces.rows() << std::endl;
|
||||
Eigen::MatrixXd tmpV;
|
||||
Eigen::MatrixXi tmpF;
|
||||
// remove any vertices now unreferenced after duplicate mapping.
|
||||
igl::remove_unreferenced(vertices, faces, tmpV, tmpF, IM);
|
||||
// Now (SV,SF) is ready to extract outer hull
|
||||
Eigen::VectorXi flip;
|
||||
igl::copyleft::cgal::outer_hull(tmpV, tmpF, vertices, faces, J, flip);
|
||||
|
||||
// // compute hull
|
||||
// igl::copyleft::cgal::convex_hull(vertices, hull_faces);
|
||||
|
||||
// std::cout << " hull faces: " << hull_faces.rows() << std::endl;
|
||||
}
|
||||
|
||||
std::cout << "tetrahedronize convex hull " << std::endl;
|
||||
Eigen::MatrixXd tets_v;
|
||||
Eigen::MatrixXi tets_t;
|
||||
Eigen::MatrixXi tets_f;
|
||||
int result = igl::copyleft::tetgen::tetrahedralize(vertices, hull_faces, "pq1.414NEF", tets_v, tets_t, tets_f);
|
||||
int result = igl::copyleft::tetgen::tetrahedralize(vertices, faces, "cY", tets_v, tets_t, tets_f);
|
||||
if (result != 0) {
|
||||
std::cout << "Tetrahedronization failed " << std::endl;
|
||||
std::cout << "Tetrahedronization failed " << result << std::endl;
|
||||
indexed_triangle_set fixed_mesh;
|
||||
fixed_mesh.vertices.resize(vertices.rows());
|
||||
fixed_mesh.indices.resize(hull_faces.rows());
|
||||
fixed_mesh.indices.resize(faces.rows());
|
||||
|
||||
for (int v = 0; v < vertices.rows(); ++v) {
|
||||
fixed_mesh.vertices[v] = vertices.row(v).cast<float>();
|
||||
}
|
||||
|
||||
for (int f = 0; f < hull_faces.rows(); ++f) {
|
||||
fixed_mesh.indices[f] = hull_faces.row(f);
|
||||
for (int f = 0; f < faces.rows(); ++f) {
|
||||
fixed_mesh.indices[f] = faces.row(f);
|
||||
}
|
||||
return fixed_mesh;
|
||||
}
|
||||
@ -121,7 +133,6 @@ indexed_triangle_set fix_model_volume_mesh(const indexed_triangle_set &mesh) {
|
||||
|
||||
std::cout << "barycenters count: " << barycenters.rows() << std::endl;
|
||||
|
||||
|
||||
// Compute generalized winding number at all barycenters from remeshed input
|
||||
std::cout << "Computing winding number over all " << tets_t.rows() << " tets..." << std::endl;
|
||||
Eigen::VectorXd W;
|
||||
@ -129,8 +140,6 @@ indexed_triangle_set fix_model_volume_mesh(const indexed_triangle_set &mesh) {
|
||||
|
||||
std::cout << "winding numbers count: " << W.rows() << std::endl;
|
||||
|
||||
|
||||
|
||||
std::cout << "Extracting internal tetrahedra " << std::endl;
|
||||
Eigen::MatrixXi CT((W.array() > 0.5).count(), 4);
|
||||
{
|
||||
@ -145,7 +154,7 @@ indexed_triangle_set fix_model_volume_mesh(const indexed_triangle_set &mesh) {
|
||||
|
||||
std::cout << "Extracting boundary faces from " << CT.rows() << " internal tetrahedra" << std::endl;
|
||||
Eigen::MatrixXi new_faces;
|
||||
igl::boundary_facets(tets_t, new_faces);
|
||||
igl::boundary_facets(CT, new_faces);
|
||||
// boundary_facets seems to be reversed...
|
||||
new_faces = new_faces.rowwise().reverse().eval();
|
||||
|
||||
@ -170,8 +179,6 @@ indexed_triangle_set fix_model_volume_mesh(const indexed_triangle_set &mesh) {
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
bool fix_model_by_tetrahedrons(ModelObject &model_object, int volume_idx, wxProgressDialog &progress_dlg,
|
||||
const wxString &msg_header, std::string &fix_result) {
|
||||
std::mutex mtx;
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user