867 Commits

Author SHA1 Message Date
Gael Guennebaud
450dc97c6b Various fixes in polynomial solver and its unit tests:
- cleanup noise in imaginary part of real roots
 - take into account the magnitude of the derivative to check roots.
 - use <= instead of < at appropriate places
2018-12-09 22:54:39 +01:00
Christoph Hertzberg
0ec8afde57 Fixed most conversion warnings in MatrixFunctions module 2018-11-20 16:23:28 +01:00
Rasmus Munk Larsen
93f9988a7e A few small fixes to a) prevent throwing in ctors and dtors of the threading code, and b) supporting matrix exponential on platforms with 113 bits of mantissa for long doubles. 2018-11-09 14:15:32 -08:00
Christoph Hertzberg
449ff74672 Fix most Doxygen warnings. Also add links to stable documentation from unsupported modules (by using the corresponding Doxytags file).
Manually grafted from d107a371c61b764c73fd1570b1f3ed1c6400dd7e
2018-10-19 21:10:28 +02:00
Gael Guennebaud
f0fb95135d Iterative solvers: unify and fix handling of multiple rhs.
m_info was not properly computed and the logic was repeated in several places.
2018-10-15 23:47:46 +02:00
Gael Guennebaud
2747b98cfc DGMRES: fix null rhs, fix restart, fix m_isDeflInitialized for multiple solve 2018-10-15 23:46:00 +02:00
Gael Guennebaud
4291f167ee Add missing plugins to DynamicSparseMatrix -- fix sparse_extra_3 2018-09-21 14:53:43 +02:00
Gael Guennebaud
b311bfb752 bug #1596: fix inclusion of Eigen's header within unsupported modules. 2018-09-17 09:54:29 +02:00
Christoph Hertzberg
ba2c8efdcf EIGEN_UNUSED is not supported by g++4.7 (and not portable) 2018-09-12 11:49:10 +02:00
Christoph Hertzberg
edfb7962fd Use static const int instead of enum to avoid numerous local-type-template-args warnings in C++03 mode 2018-09-07 14:08:39 +02:00
Alexey Frunze
edeee16a16 Fix build failures in matrix_power and matrix_exponential tests.
This fixes the static assertion complaining about double being
used in place of long double. This happened on MIPS32, where
double and long double have the same type representation.
This can be simulated on x86 as well if we pass -mlong-double-64
to g++.
2018-08-31 14:11:10 -07:00
Christoph Hertzberg
117bc5d505 Fix some shadow warnings 2018-08-25 09:06:08 +02:00
Christoph Hertzberg
c9b25fbefa Silence unused parameter warning 2018-08-17 16:28:28 +02:00
Gael Guennebaud
09c81ac033 bug #1451: fix numeric_limits<AutoDiffScalar<Der>> with a reference as derivative type 2018-08-04 00:17:37 +02:00
Mehdi Goli
01358300d5 Creating separate SYCL required PR for uncontroversial files. 2018-08-03 16:59:15 +01:00
Mehdi Goli
9e219bb3d3 Converting ad-hoc inline keyword to EIGEN_STRONG_INLINE MACRO. 2018-08-01 10:47:49 +01:00
Christoph Hertzberg
5f79b7f9a9 Removed several shadowing types and use global Index typedef everywhere 2018-07-25 21:47:45 +02:00
Christoph Hertzberg
44ee201337 Rename variable which shadows class name 2018-07-25 20:26:15 +02:00
David Hyde
d908afe35f bug #1558: fix a corner case in MINRES when both v_new and w_new vanish. 2018-07-08 22:06:38 -07:00
Gael Guennebaud
82f0ce2726 Get rid of EIGEN_TEST_FUNC, unit tests must now be declared with EIGEN_DECLARE_TEST(mytest) { /* code */ }.
This provide several advantages:
- more flexibility in designing unit tests
- unit tests can be glued to speed up compilation
- unit tests are compiled with same predefined macros, which is a requirement for zapcc
2018-07-17 14:46:15 +02:00
Gael Guennebaud
5539587b1f Some warning fixes 2018-07-17 10:29:12 +02:00
Gael Guennebaud
1920129d71 Remove clang warning 2018-07-13 16:05:35 +02:00
Deven Desai
876f392c39 Updates corresponding to the latest round of PR feedback
The major changes are

1. Moving CUDA/PacketMath.h to GPU/PacketMath.h
2. Moving CUDA/MathFunctions.h to GPU/MathFunction.h
3. Moving CUDA/CudaSpecialFunctions.h to GPU/GpuSpecialFunctions.h
    The above three changes effectively enable the Eigen "Packet" layer for the HIP platform

4. Merging the "hip_basic" and "cuda_basic" unit tests into one ("gpu_basic")
5. Updating the "EIGEN_DEVICE_FUNC" marking in some places

The change has been tested on the HIP and CUDA platforms.
2018-07-11 10:39:54 -04:00
Deven Desai
471cfe5ff7 renaming CUDA* to GPU* for some header files 2018-07-11 09:22:04 -04:00
Deven Desai
38807a2575 merging updates from upstream 2018-07-11 09:17:33 -04:00
Deven Desai
b6cc0961b1 updates based on PR feedback
There are two major changes (and a few minor ones which are not listed here...see PR discussion for details)

1. Eigen::half implementations for HIP and CUDA have been merged.
This means that
- `CUDA/Half.h` and `HIP/hcc/Half.h` got merged to a new file `GPU/Half.h`
- `CUDA/PacketMathHalf.h` and `HIP/hcc/PacketMathHalf.h` got merged to a new file `GPU/PacketMathHalf.h`
- `CUDA/TypeCasting.h` and `HIP/hcc/TypeCasting.h` got merged to a new file `GPU/TypeCasting.h`

After this change the `HIP/hcc` directory only contains one file `math_constants.h`. That will go away too once that file becomes a part of the HIP install.

2. new macros EIGEN_GPUCC, EIGEN_GPU_COMPILE_PHASE and EIGEN_HAS_GPU_FP16 have been added and the code has been updated to use them where appropriate.
- `EIGEN_GPUCC` is the same as `(EIGEN_CUDACC || EIGEN_HIPCC)`
- `EIGEN_GPU_DEVICE_COMPILE` is the same as `(EIGEN_CUDA_ARCH || EIGEN_HIP_DEVICE_COMPILE)`
- `EIGEN_HAS_GPU_FP16` is the same as `(EIGEN_HAS_CUDA_FP16 or EIGEN_HAS_HIP_FP16)`
2018-06-14 10:21:54 -04:00
Deven Desai
d1d22ef0f4 syncing this fork with upstream 2018-06-13 12:09:52 -04:00
Benoit Steiner
d3a380af4d Merged in mfigurnov/eigen/gamma-der-a (pull request PR-403)
Derivative of the incomplete Gamma function and the sample of a Gamma random variable

Approved-by: Benoit Steiner <benoit.steiner.goog@gmail.com>
2018-06-11 17:57:47 +00:00
Jonathan Liu
b7689bded9 Use std::complex constructor instead of assignment from scalar
Fixes GCC conversion to non-scalar type requested compile error when
using boost::multiprecision::cpp_dec_float_50 as scalar type.
2018-06-28 00:32:37 +10:00
Gael Guennebaud
7933267c67 fix prototype 2018-06-08 09:56:01 +02:00
Michael Figurnov
30fa3d0454 Merge from eigen/eigen 2018-06-07 17:57:56 +01:00
Michael Figurnov
6c71c7d360 Merge from eigen/eigen. 2018-06-07 15:54:18 +01:00
Gael Guennebaud
37348d03ae Fix int versus Index 2018-06-07 15:56:43 +02:00
Michael Figurnov
aa813d417b Fix compilation of special functions without C99 math.
The commit with Bessel functions i0e and i1e placed the ifdef/endif incorrectly,
causing i0e/i1e to be undefined when EIGEN_HAS_C99_MATH=0. These functions do not
actually require C99 math, so now they are always available.
2018-06-07 14:35:07 +01:00
Gael Guennebaud
b3fd93207b Fix typos found using codespell 2018-06-07 14:43:02 +02:00
Michael Figurnov
5172a32849 Updated the stopping criteria in igammac_cf_impl.
Previously, when computing the derivative, it used a relative error threshold. Now it uses an absolute error threshold. The behavior for computing the value is unchanged. This makes more sense since we do not expect the derivative to often be close to zero. This change makes the derivatives about 30% faster across the board. The error for the igamma_der_a is almost unchanged, while for gamma_sample_der_alpha it is a bit worse for float32 and unchanged for float64.
2018-06-07 12:03:58 +01:00
Michael Figurnov
4bd158fa37 Derivative of the incomplete Gamma function and the sample of a Gamma random variable.
In addition to igamma(a, x), this code implements:
* igamma_der_a(a, x) = d igamma(a, x) / da -- derivative of igamma with respect to the parameter
* gamma_sample_der_alpha(alpha, sample) -- reparameterization derivative of a Gamma(alpha, 1) random variable sample with respect to the alpha parameter

The derivatives are computed by forward mode differentiation of the igamma(a, x) code. Although gamma_sample_der_alpha can be implemented via igamma_der_a, a separate function is more accurate and efficient due to analytical cancellation of some terms. All three functions are implemented by a method parameterized with "mode" that always computes the derivatives, but does not return them unless required by the mode. The compiler is expected to (and, based on benchmarks, does) skip the unnecessary computations depending on the mode.
2018-06-06 18:49:26 +01:00
Deven Desai
8fbd47052b Adding support for using Eigen in HIP kernels.
This commit enables the use of Eigen on HIP kernels / AMD GPUs. Support has been added along the same lines as what already exists for using Eigen in CUDA kernels / NVidia GPUs.

Application code needs to explicitly define EIGEN_USE_HIP when using Eigen in HIP kernels. This is because some of the CUDA headers get picked up by default during Eigen compile (irrespective of whether or not the underlying compiler is CUDACC/NVCC, for e.g. Eigen/src/Core/arch/CUDA/Half.h). In order to maintain this behavior, the EIGEN_USE_HIP macro is used to switch to using the HIP version of those header files (see Eigen/Core and unsupported/Eigen/CXX11/Tensor)


Use the "-DEIGEN_TEST_HIP" cmake option to enable the HIP specific unit tests.
2018-06-06 10:12:58 -04:00
Michael Figurnov
f216854453 Exponentially scaled modified Bessel functions of order zero and one.
The functions are conventionally called i0e and i1e. The exponentially scaled version is more numerically stable. The standard Bessel functions can be obtained as i0(x) = exp(|x|) i0e(x)

The code is ported from Cephes and tested against SciPy.
2018-05-31 15:34:53 +01:00
Katrin Leinweber
ea94543190 Hyperlink DOIs against preferred resolver 2018-05-24 18:55:40 +02:00
Gael Guennebaud
67bac6368c protect calls to isnan 2018-04-03 14:19:04 +02:00
Gael Guennebaud
524119d32a Fix uninitialized output argument. 2018-04-03 10:56:10 +02:00
Rasmus Munk Larsen
e900b010c8 Improve robustness of igamma and igammac to bad inputs.
Check for nan inputs and propagate them immediately. Limit the number of internal iterations to 2000 (same number as used by scipy.special.gammainc). This prevents an infinite loop when the function is called with nan or very large arguments.

Original change by mfirgunov@google.com
2018-03-19 09:04:54 -07:00
Gael Guennebaud
00bc67c374 Move KLU support to official 2017-11-10 14:11:22 +01:00
Gael Guennebaud
b82cd93c01 KLU: truely disable unimplemented code, add proper static assertions in solve 2017-11-10 14:09:01 +01:00
Gael Guennebaud
8cf63ccb99 Merged in kylemacfarlan/eigen (pull request PR-337)
Add support for SuiteSparse's KLU routines
2017-11-10 10:43:17 +00:00
Gael Guennebaud
fc45324380 Merged in jkflying/eigen-fix-scaling (pull request PR-302)
Make scaling work with non-square matrices
2017-11-10 10:11:36 +00:00
Gael Guennebaud
1b2dcf9a47 Check that Schur decomposition succeed. 2017-11-10 10:26:09 +01:00
Gael Guennebaud
0a1cc73942 bug #1484: restore deleted line for 128 bits long doubles, and improve dispatching logic. 2017-11-10 10:25:41 +01:00
Kyle Vedder
c0e1d510fd Add support for SuiteSparse's KLU routines 2017-10-04 21:01:23 -05:00