891 Commits

Author SHA1 Message Date
Deven Desai
d1d22ef0f4 syncing this fork with upstream 2018-06-13 12:09:52 -04:00
Benoit Steiner
d3a380af4d Merged in mfigurnov/eigen/gamma-der-a (pull request PR-403)
Derivative of the incomplete Gamma function and the sample of a Gamma random variable

Approved-by: Benoit Steiner <benoit.steiner.goog@gmail.com>
2018-06-11 17:57:47 +00:00
Jonathan Liu
b7689bded9 Use std::complex constructor instead of assignment from scalar
Fixes GCC conversion to non-scalar type requested compile error when
using boost::multiprecision::cpp_dec_float_50 as scalar type.
2018-06-28 00:32:37 +10:00
Gael Guennebaud
7933267c67 fix prototype 2018-06-08 09:56:01 +02:00
Michael Figurnov
30fa3d0454 Merge from eigen/eigen 2018-06-07 17:57:56 +01:00
Michael Figurnov
6c71c7d360 Merge from eigen/eigen. 2018-06-07 15:54:18 +01:00
Gael Guennebaud
37348d03ae Fix int versus Index 2018-06-07 15:56:43 +02:00
Michael Figurnov
aa813d417b Fix compilation of special functions without C99 math.
The commit with Bessel functions i0e and i1e placed the ifdef/endif incorrectly,
causing i0e/i1e to be undefined when EIGEN_HAS_C99_MATH=0. These functions do not
actually require C99 math, so now they are always available.
2018-06-07 14:35:07 +01:00
Gael Guennebaud
b3fd93207b Fix typos found using codespell 2018-06-07 14:43:02 +02:00
Michael Figurnov
5172a32849 Updated the stopping criteria in igammac_cf_impl.
Previously, when computing the derivative, it used a relative error threshold. Now it uses an absolute error threshold. The behavior for computing the value is unchanged. This makes more sense since we do not expect the derivative to often be close to zero. This change makes the derivatives about 30% faster across the board. The error for the igamma_der_a is almost unchanged, while for gamma_sample_der_alpha it is a bit worse for float32 and unchanged for float64.
2018-06-07 12:03:58 +01:00
Michael Figurnov
4bd158fa37 Derivative of the incomplete Gamma function and the sample of a Gamma random variable.
In addition to igamma(a, x), this code implements:
* igamma_der_a(a, x) = d igamma(a, x) / da -- derivative of igamma with respect to the parameter
* gamma_sample_der_alpha(alpha, sample) -- reparameterization derivative of a Gamma(alpha, 1) random variable sample with respect to the alpha parameter

The derivatives are computed by forward mode differentiation of the igamma(a, x) code. Although gamma_sample_der_alpha can be implemented via igamma_der_a, a separate function is more accurate and efficient due to analytical cancellation of some terms. All three functions are implemented by a method parameterized with "mode" that always computes the derivatives, but does not return them unless required by the mode. The compiler is expected to (and, based on benchmarks, does) skip the unnecessary computations depending on the mode.
2018-06-06 18:49:26 +01:00
Deven Desai
8fbd47052b Adding support for using Eigen in HIP kernels.
This commit enables the use of Eigen on HIP kernels / AMD GPUs. Support has been added along the same lines as what already exists for using Eigen in CUDA kernels / NVidia GPUs.

Application code needs to explicitly define EIGEN_USE_HIP when using Eigen in HIP kernels. This is because some of the CUDA headers get picked up by default during Eigen compile (irrespective of whether or not the underlying compiler is CUDACC/NVCC, for e.g. Eigen/src/Core/arch/CUDA/Half.h). In order to maintain this behavior, the EIGEN_USE_HIP macro is used to switch to using the HIP version of those header files (see Eigen/Core and unsupported/Eigen/CXX11/Tensor)


Use the "-DEIGEN_TEST_HIP" cmake option to enable the HIP specific unit tests.
2018-06-06 10:12:58 -04:00
Michael Figurnov
f216854453 Exponentially scaled modified Bessel functions of order zero and one.
The functions are conventionally called i0e and i1e. The exponentially scaled version is more numerically stable. The standard Bessel functions can be obtained as i0(x) = exp(|x|) i0e(x)

The code is ported from Cephes and tested against SciPy.
2018-05-31 15:34:53 +01:00
Katrin Leinweber
ea94543190 Hyperlink DOIs against preferred resolver 2018-05-24 18:55:40 +02:00
Gael Guennebaud
67bac6368c protect calls to isnan 2018-04-03 14:19:04 +02:00
Gael Guennebaud
524119d32a Fix uninitialized output argument. 2018-04-03 10:56:10 +02:00
Rasmus Munk Larsen
e900b010c8 Improve robustness of igamma and igammac to bad inputs.
Check for nan inputs and propagate them immediately. Limit the number of internal iterations to 2000 (same number as used by scipy.special.gammainc). This prevents an infinite loop when the function is called with nan or very large arguments.

Original change by mfirgunov@google.com
2018-03-19 09:04:54 -07:00
Gael Guennebaud
00bc67c374 Move KLU support to official 2017-11-10 14:11:22 +01:00
Gael Guennebaud
b82cd93c01 KLU: truely disable unimplemented code, add proper static assertions in solve 2017-11-10 14:09:01 +01:00
Gael Guennebaud
8cf63ccb99 Merged in kylemacfarlan/eigen (pull request PR-337)
Add support for SuiteSparse's KLU routines
2017-11-10 10:43:17 +00:00
Gael Guennebaud
fc45324380 Merged in jkflying/eigen-fix-scaling (pull request PR-302)
Make scaling work with non-square matrices
2017-11-10 10:11:36 +00:00
Gael Guennebaud
1b2dcf9a47 Check that Schur decomposition succeed. 2017-11-10 10:26:09 +01:00
Gael Guennebaud
0a1cc73942 bug #1484: restore deleted line for 128 bits long doubles, and improve dispatching logic. 2017-11-10 10:25:41 +01:00
Kyle Vedder
c0e1d510fd Add support for SuiteSparse's KLU routines 2017-10-04 21:01:23 -05:00
Abhijit Kundu
6d991a9595 bug #1464 : Fixes construction of EulerAngles from 3D vector expression. 2017-08-30 13:26:30 -04:00
Julian Kent
bbe717fa2f Make scaling work with non-square matrices 2017-03-03 12:58:51 +01:00
Gael Guennebaud
d8b1f6cebd bug #1380: for Map<> as input of matrix exponential 2017-02-20 14:06:06 +01:00
Gael Guennebaud
63de19c000 bug #1380: fix matrix exponential with Map<> 2017-01-30 13:55:27 +01:00
Gael Guennebaud
bbd97b4095 Add a EIGEN_NO_CUDA option, and introduce EIGEN_CUDACC and EIGEN_CUDA_ARCH aliases 2017-07-17 01:02:51 +02:00
Mmanu Chaturvedi
2971503fed Specializing numeric_limits For AutoDiffScalar 2017-05-23 17:12:36 -04:00
Gael Guennebaud
26e8f9171e Fix compilation of matrix log with Map as input 2017-06-07 10:51:23 +02:00
Gael Guennebaud
970ff78294 bug #1401: fix compilation of "cond ? x : -x" with x an AutoDiffScalar 2017-03-08 16:16:53 +01:00
Gael Guennebaud
e8d6862f14 Properly adjust precision when saving to Market format. 2016-12-20 22:10:33 +01:00
Gael Guennebaud
e2f4ee1c2b Speed up parsing of sparse Market file. 2016-12-20 21:56:21 +01:00
Benoit Steiner
9fd081cddc Fixed compilation warnings 2016-11-26 20:22:25 -08:00
Gael Guennebaud
308961c05e Fix compilation. 2016-11-23 22:17:52 +01:00
Gael Guennebaud
7f6333c32b Merged in tal500/eigen-eulerangles (pull request PR-237)
Euler angles
2016-11-23 15:17:38 +00:00
Gael Guennebaud
56e5ec07c6 Automatically switch between EigenSolver and ComplexEigenSolver, and fix a few Real versus Scalar issues. 2016-11-23 16:05:10 +01:00
Gael Guennebaud
9246587122 Patch from Oleg Shirokobrod to extend polynomial solver to complexes 2016-11-23 15:42:26 +01:00
Tal Hadad
76b2a3e6e7 Allow to construct EulerAngles from 3D vector directly.
Using assignment template struct to distinguish between 3D vector and 3D rotation matrix.
2016-11-18 15:01:06 +02:00
Benoit Steiner
e6e77ed08b Don't call lgamma_r when compiling for an Apple device, since the function isn't available on MacOS 2016-11-02 09:55:39 -07:00
Rasmus Munk Larsen
b730952414 Don't attempts to use lgamma_r for CUDA devices.
Fix type in lgamma_impl<double>.
2016-11-01 15:34:19 -07:00
Rasmus Munk Larsen
2ebb314fa7 Use threadsafe versions of lgamma and lgammaf if possible. 2016-10-27 16:17:12 -07:00
Tal Hadad
6f4f12d1ed Add isApprox() and cast() functions.
test cases included
2016-10-17 22:23:47 +03:00
Tal Hadad
58f5d7d058 Fix calc bug, docs and better testing.
Test code changes:
* better coded
* rand and manual numbers
* singularity checking
2016-10-16 14:39:26 +03:00
Tal Hadad
078a202621 Merge Hongkai Dai correct range calculation, and remove ranges from API.
Docs updated.
2016-10-14 16:03:28 +03:00
Hongkai Dai
014d9f1d9b implement euler angles with the right ranges 2016-10-13 14:45:51 -07:00
Hongkai Dai
5dcc6d301a remove ternary operator in euler angles 2016-09-19 10:30:30 -07:00
Emil Fresk
6edd2e2851 Made AutoDiffJacobian more intuitive to use and updated for C++11
Changes:
* Removed unnecessary types from the Functor by inferring from its types
* Removed inputs() function reference, replaced with .rows()
* Updated the forward constructor to use variadic templates
* Added optional parameters to the Fuctor for passing parameters,
  control signals, etc
* Has been tested with fixed size and dynamic matricies

Ammendment by chtz: overload operator() for compatibility with not fully conforming compilers
2016-09-16 14:03:55 +02:00
Gael Guennebaud
e1642f485c bug #1288: fix memory leak in arpack wrapper. 2016-09-05 18:01:30 +02:00