254 Commits

Author SHA1 Message Date
Angelos Mantzaflaris
e8a6aa518e 1. Add explicit template to abs2 (resolves deduction for some arithmetic types)
2. Avoid signed-unsigned conversion in comparison (warning in case Scalar is unsigned)
(grafted from 4086187e49760d4bde72750dfa20ae9451263417
)
2016-12-02 11:39:18 +01:00
Gael Guennebaud
80b5133789 Fix compilation of qr.inverse() for column and full pivoting variants. 2016-10-06 09:55:50 +02:00
Gael Guennebaud
3cb914f332 bug #1266: remove CUDA guards on MatrixBase::<decomposition> definitions. (those used to break old nvcc versions that we propably don't care anymore) 2016-09-06 09:55:50 +02:00
Gael Guennebaud
35a8e94577 bug #1167: simplify installation of header files using cmake's install(DIRECTORY ...) command. 2016-08-29 10:59:37 +02:00
Gael Guennebaud
581b6472d1 bug #1265: remove outdated notes 2016-08-22 23:25:39 +02:00
Christoph Hertzberg
d3d7c6245d Add brackets to block matrix and fixed some typos 2016-07-27 09:55:39 +02:00
Gael Guennebaud
9c663e4ee8 Clean references to MKL in LAPACKe support. 2016-07-25 18:20:08 +02:00
Gael Guennebaud
0c06077efa Rename MKL files 2016-07-25 18:00:47 +02:00
Gael Guennebaud
4d54e3dd33 bug #173: remove dependency to MKL for LAPACKe backend. 2016-07-25 17:55:07 +02:00
Gael Guennebaud
7722913475 Fix ambiguous specialization with custom scalar type 2016-07-20 15:13:44 +02:00
Gael Guennebaud
7f7839c12f Add documentation and exemples for inplace decomposition. 2016-07-04 17:18:26 +02:00
Gael Guennebaud
32a41ee659 bug #707: add inplace decomposition through Ref<> for Cholesky, LU and QR decompositions. 2016-07-04 15:13:35 +02:00
Gael Guennebaud
91b3039013 Change the semantic of the last template parameter of Assignment from "Scalar" to "SFINAE" only.
The previous "Scalar" semantic was obsolete since we allow for different scalar types in the source and destination expressions.
On can still specialize on scalar types through SFINAE and/or assignment functor.
2016-07-04 11:02:00 +02:00
Gael Guennebaud
66e99ab6a1 Relax mixing-type constraints for binary coefficient-wise operators:
- Replace internal::scalar_product_traits<A,B> by Eigen::ScalarBinaryOpTraits<A,B,OP>
- Remove the "functor_is_product_like" helper (was pretty ugly)
- Currently, OP is not used, but it is available to the user for fine grained tuning
- Currently, only the following operators have been generalized: *,/,+,-,=,*=,/=,+=,-=
- TODO: generalize all other binray operators (comparisons,pow,etc.)
- TODO: handle "scalar op array" operators (currently only * is handled)
- TODO: move the handling of the "void" scalar type to ScalarBinaryOpTraits
2016-06-06 15:11:41 +02:00
Gael Guennebaud
2a44a70142 Handle some Index to int conversions in BLAS/LAPACK support. 2016-05-26 17:29:04 +02:00
Rasmus Munk Larsen
a3256d78d8 Prevent crash in CompleteOrthogonalDecomposition if object was default constructed. 2016-04-21 16:49:28 -07:00
Benoit Steiner
81d340984a Removed executable bit from header files 2016-03-23 16:15:02 -07:00
Rasmus Munk Larsen
b6fdf7468c Rename inverse -> pseudoInverse. 2016-02-10 13:03:07 -08:00
Rasmus Munk Larsen
bb8811c655 Enable inverse() method for computing pseudo-inverse. 2016-02-09 20:35:20 -08:00
Rasmus Munk Larsen
53f60e0afc Make applyZAdjointOnTheLeftInPlace protected. 2016-02-08 09:01:43 -08:00
Rasmus Munk Larsen
414efa47d3 Add missing calls to tests of COD.
Fix a few mistakes in 3.2 -> 3.3 port.
2016-02-08 08:50:34 -08:00
Rasmus Munk Larsen
16ec450ca1 Nevermind. 2016-02-06 17:54:01 -08:00
Rasmus Munk Larsen
019fff9a00 Add my name to copyright notice in ColPivHouseholder.h, mostly for previous work on stable norm downdate formula. 2016-02-06 17:48:42 -08:00
Rasmus Munk Larsen
d904c8ac8f Implement complete orthogonal decomposition in Eigen. 2016-02-06 16:32:00 -08:00
Rasmus Munk Larsen
5fb04ab2da Fix bad line break. Don't repeat Kahan matrix test since it is deterministic. 2016-02-03 10:12:10 -08:00
Rasmus Munk Larsen
d9a6f86cc0 Make the array of directly compute column norms a member to avoid allocation in computeInPlace. 2016-02-03 09:55:30 -08:00
Rasmus Munk Larsen
acce4dd050 Change Eigen's ColPivHouseholderQR to use the numerically stable norm downdate formula from http://www.netlib.org/lapack/lawnspdf/lawn176.pdf, which has been used in LAPACK's xGEQPF and xGEQP3 since 2006. With the old formula, the code chooses the wrong pivots and fails to correctly determine rank on graded matrices.
This change also adds additional checks for non-increasing diagonal in R11 to existing unit tests, and adds a new unit test with the Kahan matrix, which consistently fails for the original code.

Benchmark timings on Intel(R) Xeon(R) CPU E5-1650 v3 @ 3.50GHz. Code compiled with AVX & FMA. I just ran on square matrices of 3 difference sizes.

Benchmark               Time(ns)     CPU(ns) Iterations
-------------------------------------------------------
Before:
BM_EigencolPivQR/64        53677       53627      12890
BM_EigencolPivQR/512    15265408    15250784         46
BM_EigencolPivQR/4k  15403556228 15388788368          2

After (non-vectorized version):
Benchmark               Time(ns)     CPU(ns) Iterations  Degradation
--------------------------------------------------------------------
BM_EigencolPivQR/64        63736       63669      10844         18.5%
BM_EigencolPivQR/512    16052546    16037381         43          5.1%
BM_EigencolPivQR/4k  15149263620 15132025316          2         -2.0%

Performance-wise there seems to be a ~18.5% degradation for small (64x64) matrices, probably due to the cost of more O(min(m,n)^2) sqrt operations that are not needed for the unstable formula.
2016-01-28 15:07:26 -08:00
Gael Guennebaud
8b0d1eb0f7 Fix numerous doxygen shortcomings, and workaround some clang -Wdocumentation warnings 2016-01-01 21:45:06 +01:00
Gael Guennebaud
4519fd5d40 Fix MKL compilation issue 2015-12-11 11:11:38 +01:00
Gael Guennebaud
79c1e6d0a6 Fix compilation of MKL support. 2015-12-11 10:55:07 +01:00
Gael Guennebaud
7031a851d4 Generalize matrix ctor and compute() method of dense decomposition to 1) limit temporaries, 2) forward expressions to nested decompositions, 3) fix ambiguous ctor instanciation for square decomposition 2015-09-07 10:42:04 +02:00
Gael Guennebaud
8580eb6808 bug #949: add static assertion for incompatible scalar types in dense end-user decompositions. 2015-03-13 21:06:20 +01:00
Marc Glisse
37a93c4263 New scoring functor to select the pivot.
This is can be useful for non-floating point scalars, where choosing the biggest element is generally not the best choice.
2015-03-03 17:08:28 +01:00
Gael Guennebaud
98604576d1 Merged in chtz/eigen-indexconversion (pull request PR-92)
bug #877, bug #572: Get rid of Index conversion warnings, summary of changes:

- Introduce a global typedef Eigen::Index making Eigen::DenseIndex and AnyExpr<>::Index deprecated (default is std::ptrdiff_t).

 - Eigen::Index is used throughout the API to represent indices, offsets, and sizes.

 - Classes storing an array of indices uses the type StorageIndex to store them. This is a template parameter of the class. Default is int.

 - Methods that *explicitly* set or return an element of such an array take or return a StorageIndex type. In all other cases, the Index type is used.
2015-02-16 15:29:00 +01:00
Gael Guennebaud
cc641aabb7 Remove deprecated usage of expr::Index. 2015-02-16 14:46:51 +01:00
Christoph Hertzberg
bd511dde9d bug #952: Missing \endcode made doxygen fail to build ColPivHouseholderQR 2015-02-15 06:08:25 +01:00
Gael Guennebaud
fc202bab39 Index refactoring: StorageIndex must be used for storage only (and locally when it make sense). In all other cases use the global Index type. 2015-02-13 18:57:41 +01:00
Gael Guennebaud
fe51319980 Merge Index-refactoring branch with default, fix PastixSupport, remove some useless typedefs 2015-02-13 10:03:53 +01:00
Gael Guennebaud
f1092d2f73 bug #941: fix accuracy issue in ColPivHouseholderQR, do not stop decomposition on a small pivot 2015-01-30 19:04:04 +01:00
Christoph Hertzberg
e8cdbedefb bug #877, bug #572: Introduce a global Index typedef. Rename Sparse*::Index to StorageIndex, make Dense*::StorageIndex an alias to DenseIndex. Overall this commit gets rid of all Index conversion warnings. 2014-12-04 22:48:53 +01:00
Mark Borgerding
880e72c130 quieted more g++ warnings of the form: warning: typedef XXX locally defined but not used [-Wunused-local-typedefs] 2014-10-16 09:19:32 -04:00
Christoph Hertzberg
36448c9e28 Make constructors explicit if they could lead to unintended implicit conversion 2014-09-23 14:28:23 +02:00
Gael Guennebaud
0ca43f7e9a Remove deprecated code not used by evaluators 2014-09-18 15:15:27 +02:00
Gael Guennebaud
8846aa6d1b Optimization: enable cache-efficient application of HouseholderSequence. 2014-09-04 09:15:59 +02:00
Gael Guennebaud
85c7659574 Refactoring of sparse solvers through a SparseSolverBase class and usage of the Solve<> expression. Introduce a SolveWithGuess expression on top of Solve. 2014-09-01 15:00:19 +02:00
Gael Guennebaud
74b1d79d77 merge default and evaluator branches 2014-03-12 16:24:25 +01:00
Gael Guennebaud
9be72cda2a Port QR module to Solve/Inverse 2014-03-11 11:47:32 +01:00
Jitse Niesen
a58325ac2f Minor corrections in QR docs. 2013-12-31 18:06:28 +00:00
Christoph Hertzberg
bbf373bbe9 Applied patch from Richard JW Roberts, resolving bug #704 2013-12-21 22:14:03 +01:00
Christoph Hertzberg
6b6071866b Make pivoting HouseholderQR compatible with custom scalar types 2014-02-25 18:55:16 +01:00