73 Commits

Author SHA1 Message Date
Benoit Jacob
5a18f7545d this is essentially backporting all the changes made in the Sparse module up to KDE SVN revision r945600, aka changeset:
df9dfa145547529bf71afd4c6e8f3af947acaad0


This is what is needed to make Step (in KDE/kdeedu) build.

The rest of Eigen (outside of Sparse) is unaffected except for a few trivial changes that were needed.

calling this 2.0.3, will tag if no problem.
2009-06-04 18:02:20 +02:00
Gael Guennebaud
9ea1050281 fix MatrixNase::fillrand bug 2009-01-26 14:01:16 +00:00
Gael Guennebaud
e7c48fac9b sparse module: makes -= and += operator working
Question 1: why are *=scalar and /=scalar working right away ?
Same weirdness in DynamicSparseMatrix where operators += and -= work wihout
  having to redefine them ???
2009-01-23 13:59:32 +00:00
Gael Guennebaud
6a722602e6 fix a few remaining warnings
and fix commainitializer unit test with MSVC
2009-01-23 12:26:32 +00:00
Gael Guennebaud
d3dcb04f2d * fix compilation with gcc 3.4
* add an option to disable Qt testing
2009-01-23 09:50:16 +00:00
Gael Guennebaud
32754d806d I hope this one fix the issue with MSVC and sparse module 2009-01-22 13:59:28 +00:00
Gael Guennebaud
4225b7bf57 perhaps fix a compilation issue in the sparse module with MSVC 2009-01-21 21:02:55 +00:00
Gael Guennebaud
52cf07d266 sparse module:
* add row(i), col(i) functions
* add prune() function to remove small coefficients
2009-01-21 18:46:04 +00:00
Gael Guennebaud
36c478cd6e optimize A * v product for A sparse and row major 2009-01-19 22:29:28 +00:00
Gael Guennebaud
178858f1bd add a flexible sparse matrix class designed for fast matrix assembly 2009-01-19 15:20:45 +00:00
Gael Guennebaud
d58bb54e7f add a smart realloc algorithm when filling a sparse matrix 2009-01-18 18:00:19 +00:00
Gael Guennebaud
0c7974dd4d bugfix in Map by Keir Mierle 2009-01-18 09:53:06 +00:00
Gael Guennebaud
ccdcebcf03 Sparse module: add support for sparse selfadjoint * dense 2009-01-15 18:52:14 +00:00
Gael Guennebaud
9a4b7998cf Sparse module: add row/col methods to the iterators 2009-01-15 14:16:41 +00:00
Gael Guennebaud
87241089e1 Sparse module: bugfix in SparseMatrix::resize(), now the indices are
correctly initialized to 0.
2009-01-15 13:30:50 +00:00
Gael Guennebaud
96e1e582ff Sparse module:
* add a MappedSparseMatrix class (like Eigen::Map but for sparse
  matrices)
* rename SparseArray to CompressedStorage
2009-01-15 12:52:59 +00:00
Gael Guennebaud
4f33fbfc07 two compilation fixes 2009-01-15 08:26:40 +00:00
Gael Guennebaud
2d53466fa9 Sparse module:
* improved performance of mat*=scalar
* bug fix in cwise*
2009-01-14 21:27:54 +00:00
Gael Guennebaud
0b606dcccd Add support for sparse * dense and dense * sparse matrix/vector products 2009-01-14 17:41:55 +00:00
Gael Guennebaud
c4c70669d1 Big rewrite in the Sparse module: SparseMatrixBase no longer inherits MatrixBase.
That means a lot of features which were available for sparse matrices
via the dense (and super slow) implemention are no longer available.
All features which make sense for sparse matrices (aka can be implemented efficiently) will be
implemented soon, but don't expect to see an API as rich as for the dense path.
Other changes:
* no block(), row(), col() anymore.
* instead use .innerVector() to get a col or row vector of a matrix.
* .segment(), start(), end() will be back soon, not sure for block()
* faster cwise product
2009-01-14 14:24:10 +00:00
Benoit Jacob
1d52bd4cad the big memory changes. the most important changes are:
ei_aligned_malloc now really behaves like a malloc
 (untyped, doesn't call ctor)
ei_aligned_new is the typed variant calling ctor
EIGEN_MAKE_ALIGNED_OPERATOR_NEW now takes the class name as parameter
2009-01-08 15:20:21 +00:00
Gael Guennebaud
709e903335 Sparse module:
* extend unit tests
* add support for generic sum reduction and dot product
* optimize the cwise()* : this is a special case of CwiseBinaryOp where
  we only have to process the coeffs which are not null for *both* matrices.
  Perhaps there exist some other binary operations like that ?
2009-01-07 17:01:57 +00:00
Kenneth Frank Riddile
6736e52d25 * suppressed some minor warnings 2009-01-06 04:38:00 +00:00
Benoit Jacob
d9e5fd393a * In LU solvers: no need anymore to use row-major matrices
* Matrix: always inherit WithAlignedOperatorNew, regardless of
vectorization or not
* rename ei_alloc_stack to ei_aligned_stack_alloc
* mixingtypes test: disable vectorization as SSE intrinsics don't allow
mixing types and we just get compile errors there.
2009-01-03 22:33:08 +00:00
Gael Guennebaud
fd7eba3394 Added a SparseVector class (not tested yet) 2009-01-02 08:47:09 +00:00
Gael Guennebaud
a2782964c1 Sparse module, add an assertion and make the use of CHOLMOD's solve method the default. 2008-12-27 19:51:54 +00:00
Gael Guennebaud
ce3984844d Sparse module:
* enable complex support for the CHOLMOD LLT backend
   using CHOLMOD's triangular solver
 * quick fix for complex support in SparseLLT::solve
2008-12-27 18:13:29 +00:00
Benoit Jacob
9e00d94543 * the Upper->UpperTriangular change
* finally get ei_add_test right
2008-12-20 13:36:12 +00:00
Benoit Jacob
f34a4fa335 * forgot to svn add 2 files
* idea of Keir Mierle: make the static assert error msgs UPPERCASE
2008-12-18 21:04:06 +00:00
Gael Guennebaud
6e138d0069 more MSVC cmake fixes 2008-12-17 18:37:04 +00:00
Benoit Jacob
5f582aa4e8 fix bad typos, thanks to Kenneth Riddile 2008-12-17 17:14:37 +00:00
Benoit Jacob
89f468671d * replace postfix ++ by prefix ++ wherever that makes sense in Eigen/
* fix some "unused variable" warnings in the tests; there remains a libstdc++ "deprecated"
warning which I haven't looked much into
2008-12-17 14:30:01 +00:00
Gael Guennebaud
5015e48361 Sparse module: add a more flexible SparseMatrix::fillrand() function
which allows to fill a matrix with random inner coordinates (makes sense
only when a very few coeffs are inserted per col/row)
2008-12-11 18:26:24 +00:00
Benoit Jacob
c1e2156d8a * Much better, consistent error msgs when mixing different scalar types:
- in matrix-matrix product, static assert on the two scalar types to be the same.
- Similarly in CwiseBinaryOp. POTENTIALLY CONTROVERSIAL: we don't allow anymore binary
  ops to take two different scalar types. The functors that we defined take two args
  of the same type anyway; also we still allow the return type to be different.
  Again the reason is that different scalar types are incompatible with vectorization.
  Better have the user realize explicitly what mixing different numeric types costs him
  in terms of performance.
  See comment in CwiseBinaryOp constructor.
- This allowed to fix a little mistake in test/regression.cpp, mixing float and double
- Remove redundant semicolon (;) after static asserts
2008-12-03 21:01:55 +00:00
Gael Guennebaud
86ccd99d8d Several improvements in sparse module:
* add a LDL^T factorization with solver using code from T. Davis's LDL
  library (LPGL2.1+)
* various bug fixes in trianfular solver, matrix product, etc.
* improve cmake files for the supported libraries
* split the sparse unit test
* etc.
2008-11-05 13:47:55 +00:00
Gael Guennebaud
cf0f82ecbe sparse module:
- remove some useless stuff => let's focus on a single sparse matrix format
 - finalize the new RandomSetter
2008-10-21 13:35:04 +00:00
Gael Guennebaud
9e02e42ff6 add the bench file for the RandomSetter 2008-10-21 00:05:45 +00:00
Gael Guennebaud
3645d6c138 sparse module: add a RandomSetter based on a user defined map implementation
as described on the wiki (one map per N column)
Here's some bench results for the 4 currently supported map impl:
std::map =>             18.3385 (581 MB)
gnu::hash_map =>        6.52574 (555 MB)
google::dense =>        2.87982 (315 MB)
google::sparse =>       15.7441 (165 MB)
This is the time is second (and memory consumption) to insert/lookup
10 million of coeffs with random coords inside a 10000^2 matrix,
with one map per packet of 64 columns => google::dense really rocks !
Note I use for the key value the index of the column in the packet (between 0 and 63)
times the number of rows and I used the default hash function.... so maybe there is
room for improvement here....
2008-10-20 23:42:20 +00:00
Gael Guennebaud
5066fe8bbe * sparse LU: add extraction of L,U,P, and Q, as well as determinant
for both backends.
* extended a bit the sparse unit tests
2008-10-20 17:03:09 +00:00
Gael Guennebaud
e1c50a3cb1 add unit tests for sparse LU and fix a couple of warnings 2008-10-20 11:37:45 +00:00
Gael Guennebaud
fa27cd1ed0 * add cmake files to find (optional) supported libraries
* add unit tests for sparse cholesky
2008-10-20 10:43:11 +00:00
Gael Guennebaud
f44316e5f8 UmfPack support: add support for complex<double> 2008-10-20 00:39:11 +00:00
Gael Guennebaud
3a231c2349 sparse module: add support for umfpack, the sparse direct LU
solver from suitesparse (as cholmod). It seems to be even faster
than SuperLU and it was much simpler to interface ! Well,
the factorization is faster, but for the solve part, SuperLU is
quite faster. On the other hand the solve part represents only a
fraction of the whole procedure. Moreover, I bench random matrices
that does not represents real cases, and I'm not sure at all
I use both libraries with their best settings !
2008-10-19 22:44:21 +00:00
Gael Guennebaud
64f7fbe3f2 sparse module: some trivial bugfixes 2008-10-19 17:07:20 +00:00
Gael Guennebaud
ecc6c43dba sparse module: add preliminary support for direct sparse LU solver
using SuperLU. Calling SuperLU was very painful, but it was worth it,
it seems to be damn fast !
2008-10-19 15:26:28 +00:00
Gael Guennebaud
6be0131774 sparse module: added some documentation for the LLT solver 2008-10-18 18:33:56 +00:00
Gael Guennebaud
cfca7f71fe sparse module: much much faster transposition code 2008-10-18 11:11:10 +00:00
Gael Guennebaud
765219aa51 Big API change in Cholesky module:
* rename Cholesky to LLT
 * rename CholeskyWithoutSquareRoot to LDLT
 * rename MatrixBase::cholesky() to llt()
 * rename MatrixBase::choleskyNoSqrt() to ldlt()
 * make {LLT,LDLT}::solve() API consistent with other modules

Note that we are going to keep a source compatibility untill the next beta release.
E.g., the "old" Cholesky* classes, etc are still available for some time.
To be clear, Eigen beta2 should be (hopefully) source compatible with beta1,
and so beta2 will contain all the deprecated API of beta1. Those features marked
as deprecated will be removed in beta3 (or in the final 2.0 if there is no beta 3 !).

Also includes various updated in sparse Cholesky.
2008-10-13 15:53:27 +00:00
Urs Wolfer
8466244faa SVN_SILENT pendantic 2008-10-11 17:52:45 +00:00
Gael Guennebaud
22507fa645 Sparse module: refactoring of the cholesky factorization,
now the backends are well separated from the default impl, etc.
2008-10-05 20:19:47 +00:00